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R Language
Overview of R Material
R Syllabus
History of R & Doug Bates Background
R Language Tips & Tricks
R References
Curate R Data
Working with Data in R
Examples Using for and apply
Intro to R Adapted to dplyr
Tidyverse Split-Apply-Combine Example
purrr Package Example
Species Analysis with dplyr and purrr
Characters, Strings, and Regular Expressions
Reading and Writing Files
Visualize Data with R
ggplot2 Visualization
Shiny Web Applications
Network Data Preparation
igraph Network Visualization: Datasets 1 & 2
visNetwork Interactive Visualization
Organize Data & Docs
R Markdown for Reproducible Reports
R Functions
SQLite and dplyr
R Packages
Organizing data in R
Analyze Data
Correlation Analysis
Covariation Analysis
Linear Models
Formulas for Linear Models
Profile & Simulate
Profiling, Benchmarking, and Simulation in R
Memory Profiling with lineprof
Connect Data Tools Beyond `R`
Computing Environments: Linux, Bash, Docker, and Tooling
Reproducible Research, LaTeX & Scientific Writing
Scaling R & Data Science Teams
Professional Data Science Programs & Online Courses
Stat 692 Fall 2014 Notes
R in VS Code with Radian
Python Language
Python Coding Strategy
Interactive and Dynamic Plots
Python Default Kernel for Quarto
Organize Projects with GitHub
Publish GitHub Pages
Embed Objects in GitHub Pages
Deploy with GitHub Actions
Publish Quarto Dashboard
Use `pkgdown` to Auto-Build GitHub Website
CodeSpaces within GitHub
Version GitHub Docs
Environmental Systems
Geospatial Resources
Shiny Apps
geyser
foundrShiny
qtl2shiny
AI (Artificial Intelligence)
AI Environments
Recovering Antigravity 1.x Conversations
Large Language Models (LLMs)
Team Science Platforms
Prompt Engineering
Context Engineering
Agents and Workspace Rules
Prompt Examples
Version GitHub Docs
Quarto & Presentation Prompts
Refactor Workflows
Configure Just-the-Docs
Create Developer Guides (Blueprint)
Create Shiny App Gallery
Plotly Debouncer & Iframe Embedding
Migrate Documentation from DSHub
Agents CRAFT Templates
Check External Links
Prepare to Move or Rename a GitHub Repo
Render R Markdown to GitHub Pages
Refactor Documentation & Navigation
Create Guides
Developer Architecture & Maintenance Guide
Data Sciences
Significance and Importance
Data Repositories
Big Data
Quarto
Quarto Narrative
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Background R Material
This document has been consolidated into
History of R & Doug Bates Background
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