Ewing Substrate by Species — ewing

Ewing Substrate by Species with optional hexagonal topology layout, multi-species support, and substrate-level coordinate rescaling.

Usage

ewing_substrate(
  community,
  species,
  headstuff = c(0, "start", sum(to.plot)),
  units = getOrgFeature(community, species[1], "units"),
  right = species[1],
  adj = c(0, 0.5, 1),
  show_sub = NULL,
  step = 0,
  layout = c("facet", "hex"),
  width = 10,
  step_density = 1,
  rescale = TRUE,
  x_var = c("step", "time"),
  ...
)

ggplot_ewing_substrate(
  object,
  xlab = "horizontal",
  ylab = "vertical",
  layout = attr(object, "layout"),
  width = attr(object, "width"),
  step_density = attr(object, "step_density"),
  layers = c("poly", "hex", "organisms", "centers", "labels"),
  ...
)

# S3 method for class 'ewing_substrate'
autoplot(object, ...)

Arguments

community: Simulation community object (`ewing` S3 class)
species: Species name or vector of species names (e.g. `"host"`, `"parasite"`, or `c("host", "parasite")`)
headstuff: Title parameters
units: Unit labels
right: Right label
adj: Adjustment
show_sub: Substrate filter (defaults to all active substrates)
step: Current step
layout: Display layout (`"facet"` or `"hex"`)
width: Substrate radius limit (for hex layout)
step_density: Grid density spacing interval (for hex layout)
rescale: Logical; if `TRUE` (default for `"hex"` layout), rescales organism local coordinates so they fit strictly within each substrate patch's surface area.
...: Additional arguments
object: Object of class `ewing_substrate`
xlab: Label for x axis (facet layout)
ylab: Label for y axis (facet layout)
layers: Display layers for hex layout: vector containing any of `"poly"`, `"hex"`, `"organisms"`, `"centers"`, `"labels"`